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ImageJ / Fiji
ImageJ:
http://rsbweb.nih.gov/ij/index.html
Fiji:
http://fiji.sc/Fiji
Other Documentation
Manual about using of ImageJ/Fiji:
http://rsbweb.nih.gov/ij/docs/guide/index.html
Tutorials and examples:
http://rsbweb.nih.gov/ij/docs/index.html
Develop plugins and macros:
http://www.imagingbook.com/fileadmin/goodies/ijtutorial/tutorial171.pdf
Book about more popular algortihm:
"Digital Image Processing. An Algorithmic Introduction Using Java". Wilhelm Burger, Mark J. Burge. Springer.
Plugins
Web ImageJ:
http://rsbweb.nih.gov/ij/plugins/index.html#filters
Web Fiji:
http://fiji.sc/wiki/index.php/Category:Plugins
wiki-ImageJ:
http://imagejdocu.tudor.lu/
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